My Bibliography

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de Zwart JA, van Gelderen P, Wang Y, Duyn JH. Accelerated multislice MRI with patterned excitation. Magn Reson Med. 2024 Jan;91(1):252-265. doi: 10.1002/mrm.29850. Epub 2023 Sep 28. PubMed PMID: 37769229.

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Beck ES, Mullins WA, Dos Santos Silva J, Filippini S, Parvathaneni P, Maranzano J, Morrison M, Suto DJ, Donnay C, Dieckhaus H, Luciano NJ, Sharma K, Gaitán MI, Liu J, de Zwart JA, van Gelderen P, Cortese I, Narayanan S, Duyn JH, Nair G, Sati P, Reich DS. Cortical lesions uniquely predict motor disability accrual and form rarely in the absence of new white matter lesions in multiple sclerosis. medRxiv. 2023 Sep 25;. doi: 10.1101/2023.09.22.23295974. PubMed PMID: 37886541; PubMed Central PMCID: PMC10602044.

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van Gelderen P, Li X, de Zwart JA, Beck ES, Okar SV, Huang Y, Lai K, Sulam J, van Zijl PCM, Reich DS, Duyn JH, Liu J. Effect of motion, cortical orientation and spatial resolution on quantitative imaging of cortical R(2)* and magnetic susceptibility at 0.3 mm in-plane resolution at 7 T. Neuroimage. 2023 Apr 15;270:119992. doi: 10.1016/j.neuroimage.2023.119992. Epub 2023 Feb 27. PubMed PMID: 36858332; PubMed Central PMCID: PMC10278242.

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Wang Y, van Gelderen P, de Zwart JA, Özbay PS, Mandelkow H, Picchioni D, Duyn JH. Cerebrovascular activity is a major factor in the cerebrospinal fluid flow dynamics. Neuroimage. 2022 Sep;258:119362. doi: 10.1016/j.neuroimage.2022.119362. Epub 2022 Jun 8. PubMed PMID: 35688316; PubMed Central PMCID: PMC9271599.

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La Rosa F, Beck ES, Maranzano J, Todea RA, van Gelderen P, de Zwart JA, Luciano NJ, Duyn JH, Thiran JP, Granziera C, Reich DS, Sati P, Bach Cuadra M. Multiple sclerosis cortical lesion detection with deep learning at ultra-high-field MRI. NMR Biomed. 2022 Aug;35(8):e4730. doi: 10.1002/nbm.4730. Epub 2022 Mar 31. PubMed PMID: 35297114; PubMed Central PMCID: PMC9539569.

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Beck ES, Maranzano J, Luciano NJ, Parvathaneni P, Filippini S, Morrison M, Suto DJ, Wu T, van Gelderen P, de Zwart JA, Antel S, Fetco D, Ohayon J, Andrada F, Mina Y, Thomas C, Jacobson S, Duyn J, Cortese I, Narayanan S, Nair G, Sati P, Reich DS. Cortical lesion hotspots and association of subpial lesions with disability in multiple sclerosis. Mult Scler. 2022 Aug;28(9):1351-1363. doi: 10.1177/13524585211069167. Epub 2022 Feb 10. PubMed PMID: 35142571; PubMed Central PMCID: PMC9256754.

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Picchioni D, Özbay PS, Mandelkow H, de Zwart JA, Wang Y, van Gelderen P, Duyn JH. Autonomic arousals contribute to brain fluid pulsations during sleep. Neuroimage. 2022 Apr 1;249:118888. doi: 10.1016/j.neuroimage.2022.118888. Epub 2022 Jan 10. PubMed PMID: 35017126.

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de Zwart JA, van Gelderen P, Duyn JH. Sensitivity limitations of high-resolution perfusion-based human fMRI at 7 Tesla. Magn Reson Imaging. 2021 Dec;84:135-144. doi: 10.1016/j.mri.2021.09.014. Epub 2021 Oct 6. PubMed PMID: 34624401; PubMed Central PMCID: PMC8556366.

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Liu J, Beck ES, Filippini S, van Gelderen P, de Zwart JA, Norato G, Sati P, Al-Louzi O, Kolb H, Donadieu M, Morrison M, Duyn JH, Reich DS. Navigator-Guided Motion and B0 Correction of T2*-Weighted Magnetic Resonance Imaging Improves Multiple Sclerosis Cortical Lesion Detection. Invest Radiol. 2021 Jul 1;56(7):409-416. doi: 10.1097/RLI.0000000000000754. PubMed PMID: 34086012; PubMed Central PMCID: PMC8269363.

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Wang Y, van Gelderen P, de Zwart JA, Campbell-Washburn AE, Duyn JH. FMRI based on transition-band balanced SSFP in comparison with EPI on a high-performance 0.55 T scanner. Magn Reson Med. 2021 Jun;85(6):3196-3210. doi: 10.1002/mrm.28657. Epub 2021 Jan 21. PubMed PMID: 33480108; PubMed Central PMCID: PMC7904622.

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Goodale SE, Ahmed N, Zhao C, de Zwart JA, Özbay PS, Picchioni D, Duyn J, Englot DJ, Morgan VL, Chang C. fMRI-based detection of alertness predicts behavioral response variability. Elife. 2021 May 7;10. doi: 10.7554/eLife.62376. PubMed PMID: 33960930; PubMed Central PMCID: PMC8104962.

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Gudino N, de Zwart JA, Duyn JH. Eight-channel parallel transmit-receive system for 7 T MRI with optically controlled and monitored on-coil current-mode RF amplifiers. Magn Reson Med. 2020 Dec;84(6):3494-3501. doi: 10.1002/mrm.28392. Epub 2020 Jul 14. PubMed PMID: 32662913; PubMed Central PMCID: PMC7722142.

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Wang Y, van Gelderen P, de Zwart JA, Duyn JH. B(0)-field dependence of MRI T(1) relaxation in human brain. Neuroimage. 2020 Jun;213:116700. doi: 10.1016/j.neuroimage.2020.116700. Epub 2020 Mar 5. PubMed PMID: 32145438; PubMed Central PMCID: PMC7165058.

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Liu J, van Gelderen P, de Zwart JA, Duyn JH. Reducing motion sensitivity in 3D high-resolution T(2)*-weighted MRI by navigator-based motion and nonlinear magnetic field correction. Neuroimage. 2020 Feb 1;206:116332. doi: 10.1016/j.neuroimage.2019.116332. Epub 2019 Nov 2. PubMed PMID: 31689535; PubMed Central PMCID: PMC6981037.

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Özbay PS, Chang C, Picchioni D, Mandelkow H, Chappel-Farley MG, van Gelderen P, de Zwart JA, Duyn J. Sympathetic activity contributes to the fMRI signal. Commun Biol. 2019;2:421. doi: 10.1038/s42003-019-0659-0. eCollection 2019. PubMed PMID: 31754651; PubMed Central PMCID: PMC6861267.

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Moehlman TM, de Zwart JA, Chappel-Farley MG, Liu X, McClain IB, Chang C, Mandelkow H, Özbay PS, Johnson NL, Bieber RE, Fernandez KA, King KA, Zalewski CK, Brewer CC, van Gelderen P, Duyn JH, Picchioni D. All-night functional magnetic resonance imaging sleep studies. J Neurosci Methods. 2019 Mar 15;316:83-98. doi: 10.1016/j.jneumeth.2018.09.019. Epub 2018 Sep 20. PubMed PMID: 30243817; PubMed Central PMCID: PMC6524535.

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Liu J, de Zwart JA, van Gelderen P, Murphy-Boesch J, Duyn JH. Effect of head motion on MRI B(0) field distribution. Magn Reson Med. 2018 Dec;80(6):2538-2548. doi: 10.1002/mrm.27339. Epub 2018 May 16. PubMed PMID: 29770481; PubMed Central PMCID: PMC6239980.

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de Zwart JA, van Gelderen P, Schindler MK, Sati P, Liu J, Reich DS, Duyn JH. Impulse response timing differences in BOLD and CBV weighted fMRI. Neuroimage. 2018 Nov 1;181:292-300. doi: 10.1016/j.neuroimage.2018.07.011. Epub 2018 Jul 5. PubMed PMID: 29981905; PubMed Central PMCID: PMC6739851.

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Özbay PS, Chang C, Picchioni D, Mandelkow H, Moehlman TM, Chappel-Farley MG, van Gelderen P, de Zwart JA, Duyn JH. Contribution of systemic vascular effects to fMRI activity in white matter. Neuroimage. 2018 Aug 1;176:541-549. doi: 10.1016/j.neuroimage.2018.04.045. Epub 2018 Apr 25. PubMed PMID: 29704614; PubMed Central PMCID: PMC7328303.

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Ianniello C, de Zwart JA, Duan Q, Deniz CM, Alon L, Lee JS, Lattanzi R, Brown R. Synthesized tissue-equivalent dielectric phantoms using salt and polyvinylpyrrolidone solutions. Magn Reson Med. 2018 Jul;80(1):413-419. doi: 10.1002/mrm.27005. Epub 2017 Nov 20. PubMed PMID: 29159985; PubMed Central PMCID: PMC5876111.

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Gudino N, de Zwart JA, Duan Q, Dodd SJ, Murphy-Boesch J, van Gelderen P, Duyn JH. Optically controlled on-coil amplifier with RF monitoring feedback. Magn Reson Med. 2018 May;79(5):2833-2841. doi: 10.1002/mrm.26916. Epub 2017 Sep 14. PubMed PMID: 28905426; PubMed Central PMCID: PMC5839114.

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Liu X, de Zwart JA, Schölvinck ML, Chang C, Ye FQ, Leopold DA, Duyn JH. Subcortical evidence for a contribution of arousal to fMRI studies of brain activity. Nat Commun. 2018 Jan 26;9(1):395. doi: 10.1038/s41467-017-02815-3. PubMed PMID: 29374172; PubMed Central PMCID: PMC5786066.

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Mandelkow H, de Zwart JA, Duyn JH. Effects of spatial fMRI resolution on the classification of naturalistic movies. Neuroimage. 2017 Nov 15;162:45-55. doi: 10.1016/j.neuroimage.2017.08.053. Epub 2017 Aug 24. PubMed PMID: 28842385; PubMed Central PMCID: PMC9881349.

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Gudino N, Duan Q, de Zwart JA, Murphy-Boesch J, Dodd SJ, Merkle H, van Gelderen P, Duyn JH. Optically controlled switch-mode current-source amplifiers for on-coil implementation in high-field parallel transmission. Magn Reson Med. 2016 Jul;76(1):340-9. doi: 10.1002/mrm.25857. Epub 2015 Aug 10. PubMed PMID: 26256671; PubMed Central PMCID: PMC4749483.

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Mandelkow H, de Zwart JA, Duyn JH. Linear Discriminant Analysis Achieves High Classification Accuracy for the BOLD fMRI Response to Naturalistic Movie Stimuli. Front Hum Neurosci. 2016;10:128. doi: 10.3389/fnhum.2016.00128. eCollection 2016. PubMed PMID: 27065832; PubMed Central PMCID: PMC4815557.

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van Gelderen P, Mandelkow H, de Zwart JA, Duyn JH. A torque balance measurement of anisotropy of the magnetic susceptibility in white matter. Magn Reson Med. 2015 Nov;74(5):1388-96. doi: 10.1002/mrm.25524. Epub 2014 Nov 14. PubMed PMID: 25399830; PubMed Central PMCID: PMC4431960.

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Duan Q, Nair G, Gudino N, de Zwart JA, van Gelderen P, Murphy-Boesch J, Reich DS, Duyn JH, Merkle H. A 7T spine array based on electric dipole transmitters. Magn Reson Med. 2015 Oct;74(4):1189-97. doi: 10.1002/mrm.25817. Epub 2015 Jul 20. PubMed PMID: 26190585; PubMed Central PMCID: PMC4575257.

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Li X, van Gelderen P, Sati P, de Zwart JA, Reich DS, Duyn JH. Detection of demyelination in multiple sclerosis by analysis of [Formula: see text] relaxation at 7 T. Neuroimage Clin. 2015;7:709-714. doi: 10.1016/j.nicl.2015.02.021. eCollection 2015. PubMed PMID: 26594617; PubMed Central PMCID: PMC4593862.

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Liu Z, de Zwart JA, Chang C, Duan Q, van Gelderen P, Duyn JH. Neuroelectrical decomposition of spontaneous brain activity measured with functional magnetic resonance imaging. Cereb Cortex. 2014 Nov;24(11):3080-9. doi: 10.1093/cercor/bht164. Epub 2013 Jun 24. PubMed PMID: 23796947; PubMed Central PMCID: PMC4200040.

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Duan Q, Duyn JH, Gudino N, de Zwart JA, van Gelderen P, Sodickson DK, Brown R. Characterization of a dielectric phantom for high-field magnetic resonance imaging applications. Med Phys. 2014 Oct;41(10):102303. doi: 10.1118/1.4895823. PubMed PMID: 25281973; PubMed Central PMCID: PMC4281072.

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Bright MG, Bianciardi M, de Zwart JA, Murphy K, Duyn JH. Early anti-correlated BOLD signal changes of physiologic origin. Neuroimage. 2014 Feb 15;87:287-96. doi: 10.1016/j.neuroimage.2013.10.055. Epub 2013 Nov 5. PubMed PMID: 24211818; PubMed Central PMCID: PMC4001078.

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de Zwart JA, van Gelderen P, Liu Z, Duyn JH. Independent sources of spontaneous BOLD fluctuation along the visual pathway. Brain Topogr. 2013 Oct;26(4):525-37. doi: 10.1007/s10548-013-0290-1. Epub 2013 May 10. PubMed PMID: 23660870; PubMed Central PMCID: PMC3815538.

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Sati P, van Gelderen P, Silva AC, Reich DS, Merkle H, de Zwart JA, Duyn JH. Micro-compartment specific T2* relaxation in the brain. Neuroimage. 2013 Aug 15;77:268-78. doi: 10.1016/j.neuroimage.2013.03.005. Epub 2013 Mar 22. PubMed PMID: 23528924; PubMed Central PMCID: PMC3816634.

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Jansma JM, de Zwart JA, van Gelderen P, Duyn JH, Drevets WC, Furey ML. In vivo evaluation of the effect of stimulus distribution on FIR statistical efficiency in event-related fMRI. J Neurosci Methods. 2013 May 15;215(2):190-5. doi: 10.1016/j.jneumeth.2013.02.017. Epub 2013 Mar 7. PubMed PMID: 23473798; PubMed Central PMCID: PMC3856426.

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Liu Z, de Zwart JA, Yao B, van Gelderen P, Kuo LW, Duyn JH. Finding thalamic BOLD correlates to posterior alpha EEG. Neuroimage. 2012 Nov 15;63(3):1060-9. doi: 10.1016/j.neuroimage.2012.08.025. Epub 2012 Aug 17. PubMed PMID: 22986355; PubMed Central PMCID: PMC3472152.

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Liu Z, de Zwart JA, van Gelderen P, Kuo LW, Duyn JH. Statistical feature extraction for artifact removal from concurrent fMRI-EEG recordings. Neuroimage. 2012 Feb 1;59(3):2073-87. doi: 10.1016/j.neuroimage.2011.10.042. Epub 2011 Oct 20. PubMed PMID: 22036675; PubMed Central PMCID: PMC3254729.

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van Gelderen P, de Zwart JA, Lee J, Sati P, Reich DS, Duyn JH. Nonexponential T₂ decay in white matter. Magn Reson Med. 2012 Jan;67(1):110-7. doi: 10.1002/mrm.22990. Epub 2011 May 31. PubMed PMID: 21630352; PubMed Central PMCID: PMC3299484.

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Freed M, de Zwart JA, Hariharan P, Myers MR, Badano A. Development and characterization of a dynamic lesion phantom for the quantitative evaluation of dynamic contrast-enhanced MRI. Med Phys. 2011 Oct;38(10):5601-11. doi: 10.1118/1.3633911. PubMed PMID: 21992378; PubMed Central PMCID: PMC3195376.

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Wang S, de Zwart JA, Duyn JH. A fast integral equation method for simulating high-field radio frequency coil arrays in magnetic resonance imaging. Phys Med Biol. 2011 May 7;56(9):2779-89. doi: 10.1088/0031-9155/56/9/010. Epub 2011 Apr 5. PubMed PMID: 21464529.

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Bianciardi M, Fukunaga M, van Gelderen P, de Zwart JA, Duyn JH. Negative BOLD-fMRI signals in large cerebral veins. J Cereb Blood Flow Metab. 2011 Feb;31(2):401-12. doi: 10.1038/jcbfm.2010.164. Epub 2010 Sep 22. PubMed PMID: 20859295; PubMed Central PMCID: PMC3049531.

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Freed M, de Zwart JA, Loud JT, El Khouli RH, Myers KJ, Greene MH, Duyn JH, Badano A. An anthropomorphic phantom for quantitative evaluation of breast MRI. Med Phys. 2011 Feb;38(2):743-53. doi: 10.1118/1.3533899. PubMed PMID: 21452712; PubMed Central PMCID: PMC3033878.

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Liu Z, Fukunaga M, de Zwart JA, Duyn JH. Large-scale spontaneous fluctuations and correlations in brain electrical activity observed with magnetoencephalography. Neuroimage. 2010 May 15;51(1):102-11. doi: 10.1016/j.neuroimage.2010.01.092. Epub 2010 Feb 1. PubMed PMID: 20123024; PubMed Central PMCID: PMC2847019.

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Fukunaga M, Li TQ, van Gelderen P, de Zwart JA, Shmueli K, Yao B, Lee J, Maric D, Aronova MA, Zhang G, Leapman RD, Schenck JF, Merkle H, Duyn JH. Layer-specific variation of iron content in cerebral cortex as a source of MRI contrast. Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3834-9. doi: 10.1073/pnas.0911177107. Epub 2010 Feb 3. PubMed PMID: 20133720; PubMed Central PMCID: PMC2840419.

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Shmueli K, de Zwart JA, van Gelderen P, Li TQ, Dodd SJ, Duyn JH. Magnetic susceptibility mapping of brain tissue in vivo using MRI phase data. Magn Reson Med. 2009 Dec;62(6):1510-22. doi: 10.1002/mrm.22135. PubMed PMID: 19859937; PubMed Central PMCID: PMC4275127.

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Qin L, van Gelderen P, Derbyshire JA, Jin F, Lee J, de Zwart JA, Tao Y, Duyn JH. Prospective head-movement correction for high-resolution MRI using an in-bore optical tracking system. Magn Reson Med. 2009 Oct;62(4):924-34. doi: 10.1002/mrm.22076. PubMed PMID: 19526503; PubMed Central PMCID: PMC3523280.

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Bianciardi M, Fukunaga M, van Gelderen P, Horovitz SG, de Zwart JA, Shmueli K, Duyn JH. Sources of functional magnetic resonance imaging signal fluctuations in the human brain at rest: a 7 T study. Magn Reson Imaging. 2009 Oct;27(8):1019-29. doi: 10.1016/j.mri.2009.02.004. Epub 2009 Apr 17. PubMed PMID: 19375260; PubMed Central PMCID: PMC3512098.

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de Zwart JA, van Gelderen P, Jansma JM, Fukunaga M, Bianciardi M, Duyn JH. Hemodynamic nonlinearities affect BOLD fMRI response timing and amplitude. Neuroimage. 2009 Oct 1;47(4):1649-58. doi: 10.1016/j.neuroimage.2009.06.001. Epub 2009 Jun 8. PubMed PMID: 19520175; PubMed Central PMCID: PMC2731556.

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Papoutsi M, de Zwart JA, Jansma JM, Pickering MJ, Bednar JA, Horwitz B. From phonemes to articulatory codes: an fMRI study of the role of Broca's area in speech production. Cereb Cortex. 2009 Sep;19(9):2156-65. doi: 10.1093/cercor/bhn239. Epub 2009 Jan 29. PubMed PMID: 19181696; PubMed Central PMCID: PMC2722428.

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Bianciardi M, Fukunaga M, van Gelderen P, Horovitz SG, de Zwart JA, Duyn JH. Modulation of spontaneous fMRI activity in human visual cortex by behavioral state. Neuroimage. 2009 Mar 1;45(1):160-8. doi: 10.1016/j.neuroimage.2008.10.034. Epub 2008 Nov 6. PubMed PMID: 19028588; PubMed Central PMCID: PMC2704889.

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Yao B, Li TQ, Gelderen Pv, Shmueli K, de Zwart JA, Duyn JH. Susceptibility contrast in high field MRI of human brain as a function of tissue iron content. Neuroimage. 2009 Feb 15;44(4):1259-66. doi: 10.1016/j.neuroimage.2008.10.029. Epub 2008 Nov 5. PubMed PMID: 19027861; PubMed Central PMCID: PMC2670442.